🔬 MRSA vs MSSA
Proportion of methicillin-resistant and methicillin-susceptible isolates across the entire dataset.
MRSA / MSSA composition
Capsule type distribution
🧬 MLST & Clonal Complexes
Top sequence types with MRSA rate overlay — bars show genome count, the red percentage shows how methicillin-resistant each lineage is.
Top 20 sequence types — with MRSA %
Clonal complex distribution
spa type distribution
🛡️ SCCmec — RPet vs CGE callers
Cassette chromosome mec type, computed by two independent callers. RPet reports subtype-level (IVa, IVc, IVg) while CGE reports coarser types.
SCCmec — RPet caller
SCCmec — CGE caller
RPet ↔ CGE agreement
agr type distribution
🔀 SCCmec × agr — lineage-cassette association
Each bar shows the composition of quorum-sensing types within a given SCCmec type. Reveals which agr groups preferentially co-occur with which cassettes.
SCCmec type (RPet) × agr group
🌈 Multi-dimensional flow
A four-level alluvial showing how each isolate partitions through SCCmec → agr → Capsule → MRSA status. Wider ribbons = more genomes. Hover a ribbon to see exact counts.
Lineage flow — SCCmec → agr → Capsule → MRSA
🌡️ Clonal complex × SCCmec
The classic lineage–cassette association table. Darker = more genomes.
Lineage–cassette heatmap
💊 Capsule type by clonal complex
Stacked distribution of cap5 vs cap8 across the top clonal complexes.
Capsule type by CC
All data reflects the current SAURUS collection of 60,182 RefSeq genomes (updated 2026-10-16 08:08:22). Bar charts show genome counts; donuts show proportional composition; the heatmap shows co-occurrence; the alluvial shows hierarchical flow through four typing layers.