🌍 Country of origin
Top 30 countries by genome count, plus the continental rollup.
Country comes from BioSample geo_loc_name.
Click any bar to filter the page.
Top countries
Continent distribution
🏥 Isolation source — the clinical lens
Raw BioSample isolation_source values collapse into
epidemiological super-groups. The Clinical · ICU category
captures A. baumannii's hospital-adapted niche — respiratory (VAP),
bloodstream, catheter-associated, and healthcare-environment samples.
Source super-groups
Detailed source categories
👤 Host & collection timeline
Host species as submitted to BioSample, and year-by-year submission volume.
Top hosts
Collection timeline
🌡️ Country × source heatmap
Which source categories dominate each country. Darker = more genomes. Recomputes live as you filter.
📋 Country table
Full country breakdown with continent. Search, filter, sort.
| Country | Continent | Genomes | % of total | Distribution |
|---|
🧬 Genome retrieval
Filter by country, source, host, or collection year — then export a clean
accession list ready for
datasets download genome accession --inputfile list.txt.
| Accession | Country | Source (normalised) | Source (raw BioSample) | Category | Host | Year | Copy |
|---|
📊 Reading this page
All counts come from NCBI BioSample records attached to ABYSS genomes. Coverage: 96.4% have country, 83.2% have isolation source, 90.8% have host, 94.8% have collection year.
Source categories are normalised — a submission saying
human respiratory sample and one saying sputum
both land in respiratory. The
raw BioSample string is preserved alongside the
normalised value in the retrieval table, so every result can be
verified against the original submitter entry.
The Clinical · ICU super-group is a deliberate design choice for ABYSS: it captures the hospital-adapted niche that defines Acinetobacter baumannii. It is not a clinical diagnosis — it is an epidemiological summary.