Showing up to 2,000 rows. For the complete list including all variant alleles, download amr_gene_freq.tsv.gz from the Downloads page.
About this module
This page lets you retrieve E. coli genomes by amr genes.
Pick up to five genes, choose whether samples must match
any or all of them, and download the
accession list — ready for
datasets download genome accession --inputfile list.txt.
Source
AMRFinderPlus against CARD, ResFinder, ARG-ANNOT, MEGARes.
How to use it
- Click a quick-pick chip, or use the autocomplete search to find any of the 6,143 genes
- Add up to 5 genes — the results table updates instantly
- Switch between Match ANY (union) and Match ALL (intersection)
- Click 🧬 Accessions to download the accession list as plain text
- Or use TSV/CSV/JSON for per-gene presence flags plus metadata
Coverage in this build
- 1,391 genomes carry at least one amr genes determinant
- 6,143 unique genes
- 572,687 presence records
Full data download
For the complete presence matrix (long format:
accession | gene | num_hits | identities)
and the full frequency table, go to the
Downloads page. All files are gzipped TSVs.
Cite
- EcoliTyper: Beckley B, Amarh V. BMC Bioinformatics 2026. DOI