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E. coli Library for Integrated Pathogen Surveillance and Epidemiology
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๐งฌ TYPING MODULE
Phylogroup Typing
Clermont phylogroup classification ยท A, B1, B2, C, D, E, F, G
Tip: type
B2
for phylogroup,
ExPEC
for ecotype
Phylogroup
All
A
B1
B2
D
F
C
E
Not Assigned
G
Ecotype
All
Commensal
Virulence-associated
Cryptic
Not Assigned
Status
All
Assigned
Not Assigned
Country
All
Tanzania
Niger
Jordan
Rwanda
United States
Mozambique
Ghana
Ethiopia
Nigeria
โ
Sudan
Mali
Malawi
Senegal
Egypt
Kenya
South Africa
United Kingdom
Gambia
Australia
Tunisia
Source
All
gastrointestinal
urinary
โ
animal/livestock
skin/wound
respiratory
culture/lab
environmental
blood
food
HVS
Mashed product
fecal sample
bed
hand
Caecum
tap
alfalfa sprout
bagged lettuce
bodily fluid
dripstand
lettuce
mediteranean mussel
Collection Year
All
โ
2021
2016
2014
2015
2022
2017
2013
2019
2018
2023
2020
2012
2009
2003
2004
2006
2010
โ Columns
0 selected
Visible rows
Selected rows
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