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E. coli Library for Integrated Pathogen Surveillance and Epidemiology
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๐งฌ TYPING MODULE
CHTyper
fumC + fimH allele typing
Tip: type
CH11-30
for exact CH type,
fimH30
for the allele
CH Type
All
CH11-Unknown
CH11-54
CH40-30
CH4-Unknown
CH4-32
CH230-31
CH35-27
CH40-41
CH7-898
CH4-24
CH29-31
CH40-22
CH29-38
CH37-27
CH11-24
CH11-27
CH19-31
CH88-58
CH6-35
CH4-31
CH11-23
CH7-54
CH14-64
CH26-5
CH6-32
CH371-1356
CH4-121
CH7-34
CH95-32
CH65-32
CH11-25
CH4-27
CH88-5
CH4-54
CH4-61
CH19-32
CH19-86
CH6-Unknown
CH7-24
CH11-1296
CH24-10
CH41-86
CH99-Unknown
CH11-29
CH23-31
CH26-65
CH27-54
CH33-44
CH4-53
CH4-86
CH7-Unknown
CHUnknown-898
CH11-215
CH11-388
CH186-370
CH26-54
CH27-41
CH29-32
CH4-142
CH616-Unknown
CH65-38
Unknown
CH14-27
CH174-54
CH22-94
CH23-38
CH23-54
CH322-35
CH36-54
CH37-29
CH4-1109
CH6-31
CH95-31
CH11-34
CH11-398
CH11-41
CH13-106
CH14-2
CH36-48
CH4-1544
CH4-366
CH43-21
CH45-97
CH65-27
CH7-41
CH7-86
CH8-566
CH88-145
CH88-Unknown
CH99-54
CH100-96
CH108-Unknown
CH11-198
CH11-32
CH11-69
CH116-552
CH13-295
CH132-34
CH186-1353
CH22-1041
CH23-25
CH26-Unknown
CH27-Unknown
CH3-54
CH31-27
CH35-54
CH36-93
CH4-1163
CH4-149
CH4-23
CH4-3063
CH4-38
CH41-35
CH501-86
CH52-414
CH6-289
CH6-54
CH7-25
CH7-31
CH106-54
CH11-167
CH11-43
CH12-342
CH12-82
CH13-1502
CH13-Unknown
CH133-Unknown
CH14-54
CH19-1238
CH19-24
CH19-38
CH19-87
CH193-124
CH24-184
CH26-1283
CH26-27
CH26-3
CH27-295
CH27-902
CH29-86
CH3-1002
CH35-30
CH35-47
CH38-27
CH4-1079
CH4-108
CH4-1325
CH4-39
CH4-764
CH41-34
CH412-31
CH44-9
CH46-545
CH463-31
CH464-Unknown
CH52-76
CH7-1645
CH7-167
CH7-40
CH95-1934
CH95-Unknown
CH11-1339
CH11-2751
CH11-30
CH11-31
CH11-5
CH11-53
CH11-756
CH11-822
CH11-823
CH11-956
CH13-386
CH13-5
CH132-362
CH132-54
CH136-331
CH14-180
CH14-457
CH14-5
CH148-2529
CH153-41
CH171-929
CH174-27
CH174-Unknown
CH18-229
CH186-221
CH186-31
CH19-2132
CH19-2623
CH19-43
CH19-Unknown
CH20-2509
CH209-221
CH209-31
CH218-31
CH22-86
CH224-1082
CH23-30
CH23-32
CH23-Unknown
CH231-58
CH24-103
CH24-1508
CH24-241
CH24-60
CH24-94
CH252-Unknown
CH255-94
CH26-24
CH26-270
CH27-43
CH27-603
CH3-1041
CH3-299
CH30-27
CH306-550
CH31-25
CH32-27
CH321-2030
CH35-Unknown
CH354-850
CH36-47
CH36-Unknown
CH363-75
CH37-1572
CH37-56
CH371-840
CH38-5
CH389-Unknown
CH39-2
CH4-1171
CH4-153
CH4-237
CH4-25
CH4-2547
CH4-2698
CH4-279
CH4-289
CH4-34
CH4-35
CH4-444
CH4-60
CH40-21
CH40-27
CH406-31
CH41-396
CH412-426
CH43-2
CH43-20
CH43-225
CH44-154
CH45-1775
CH45-Unknown
CH452-1645
CH464-24
CH464-444
CH474-Unknown
CH5-Unknown
CH517-2388
CH519-221
CH526-54
CH532-27
CH532-Unknown
CH578-32
CH58-124
CH597-656
CH6-149
CH6-25
CH6-39
CH6-53
CH6-634
CH6-68
CH610-2388
CH63-Unknown
CH65-68
CH7-122
CH7-1990
CH7-23
CH7-370
CH7-43
CH7-559
CH70-24
CH703-2388
CH748-Unknown
CH773-124
CH88-54
CH884-31
CH9-2850
CH90-31
CH918-54
CH95-1296
CH95-259
CH958-470
CH961-121
CH98-20
CH99-3308
CHUnknown-1296
CHUnknown-2388
CHUnknown-24
CHUnknown-31
CHUnknown-38
fumC
All
fumC11
fumC4
fumC40
fumC7
fumC29
fumC6
fumC19
fumC88
fumC26
fumC35
fumC230
fumC37
fumC14
fumC95
fumC23
fumC65
fumC27
Unknown
fumC24
fumC36
fumC371
fumC41
fumC13
fumC99
fumC186
fumC22
fumC174
fumC3
fumC33
fumC43
fumC45
fumC616
fumC132
fumC322
fumC52
fumC12
fumC31
fumC464
fumC8
fumC100
fumC108
fumC116
fumC38
fumC412
fumC44
fumC501
fumC106
fumC133
fumC193
fumC209
fumC46
fumC463
fumC532
fumC136
fumC148
fumC153
fumC171
fumC18
fumC20
fumC218
fumC224
fumC231
fumC252
fumC255
fumC30
fumC306
fumC32
fumC321
fumC354
fumC363
fumC389
fumC39
fumC406
fumC452
fumC474
fumC5
fumC517
fumC519
fumC526
fumC578
fumC58
fumC597
fumC610
fumC63
fumC70
fumC703
fumC748
fumC773
fumC884
fumC9
fumC90
fumC918
fumC958
fumC961
fumC98
fimH
All
Unknown
fimH54
fimH31
fimH30
fimH27
fimH32
fimH24
fimH41
fimH38
fimH898
fimH86
fimH5
fimH35
fimH22
fimH58
fimH23
fimH34
fimH25
fimH64
fimH121
fimH1356
fimH29
fimH1296
fimH61
fimH53
fimH10
fimH370
fimH44
fimH65
fimH94
fimH142
fimH2
fimH215
fimH388
fimH1109
fimH21
fimH295
fimH43
fimH1041
fimH106
fimH124
fimH145
fimH149
fimH1544
fimH167
fimH2388
fimH289
fimH366
fimH398
fimH48
fimH566
fimH97
fimH1163
fimH1353
fimH1645
fimH198
fimH221
fimH3063
fimH39
fimH414
fimH47
fimH552
fimH69
fimH93
fimH96
fimH1002
fimH1079
fimH108
fimH1238
fimH1283
fimH1325
fimH1502
fimH184
fimH1934
fimH20
fimH3
fimH342
fimH40
fimH444
fimH545
fimH60
fimH68
fimH76
fimH764
fimH82
fimH87
fimH9
fimH902
fimH103
fimH1082
fimH1171
fimH122
fimH1339
fimH1508
fimH153
fimH154
fimH1572
fimH1775
fimH180
fimH1990
fimH2030
fimH2132
fimH225
fimH229
fimH237
fimH241
fimH2509
fimH2529
fimH2547
fimH259
fimH2623
fimH2698
fimH270
fimH2751
fimH279
fimH2850
fimH299
fimH3308
fimH331
fimH362
fimH386
fimH396
fimH426
fimH457
fimH470
fimH550
fimH559
fimH56
fimH603
fimH634
fimH656
fimH75
fimH756
fimH822
fimH823
fimH840
fimH850
fimH929
fimH956
Status
All
Completed
Country
All
Tanzania
Niger
Jordan
Rwanda
United States
Mozambique
Ghana
Ethiopia
Nigeria
โ
Sudan
Mali
Malawi
Senegal
Egypt
Kenya
South Africa
United Kingdom
Gambia
Australia
Tunisia
Source
All
gastrointestinal
urinary
โ
animal/livestock
skin/wound
respiratory
culture/lab
environmental
blood
food
HVS
Mashed product
fecal sample
bed
hand
Caecum
tap
alfalfa sprout
bagged lettuce
bodily fluid
dripstand
lettuce
mediteranean mussel
Collection Year
All
โ
2021
2016
2014
2015
2022
2017
2013
2019
2018
2023
2020
2012
2009
2003
2004
2006
2010
โ Columns
0 selected
Visible rows
Selected rows
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